J3_6ZQD_012

3D structure

PDB id

6ZQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCA*UAGUAA*UGAUUACG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQD|1|D3|C|1161
6ZQD|1|D3|C|1162
6ZQD|1|D3|A|1163
*
6ZQD|1|D3|U|1582
6ZQD|1|D3|A|1583
6ZQD|1|D3|G|1584
6ZQD|1|D3|U|1585
6ZQD|1|D3|A|1586
6ZQD|1|D3|A|1587
*
6ZQD|1|D3|U|1609
6ZQD|1|D3|G|1610
6ZQD|1|D3|A|1611
6ZQD|1|D3|U|1612
6ZQD|1|D3|U|1613
6ZQD|1|D3|A|1614
6ZQD|1|D3|C|1615
6ZQD|1|D3|G|1616

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CJ

U3 small nucleolar ribonucleoprotein protein IMP4

Chain DF

Rps5p

Chain DQ

40S ribosomal protein S16-A

Chain Dc

40S ribosomal protein S28-A

Chain UA

Periodic tryptophan protein 2