J3_6ZQG_001

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6ZQG|1|D3|U|45, 6ZQG|1|D3|A|47, 6ZQG|1|D3|C|433, 6ZQG|1|D3|A|436, 6ZQG|1|D3|A|437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQG|1|D3|A|41
6ZQG|1|D3|G|42
6ZQG|1|D3|A|43
6ZQG|1|D3|U|44
6ZQG|1|D3|U|45
6ZQG|1|D3|A|46
6ZQG|1|D3|A|47
6ZQG|1|D3|G|48
*
6ZQG|1|D3|C|431
6ZQG|1|D3|G|432
6ZQG|1|D3|C|433
6ZQG|1|D3|G|434
6ZQG|1|D3|C|435
6ZQG|1|D3|A|436
6ZQG|1|D3|A|437
6ZQG|1|D3|A|438
6ZQG|1|D3|U|439
*
6ZQG|1|D3|A|464
6ZQG|1|D3|G|465
6ZQG|1|D3|U|466

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain DJ

40S ribosomal protein S9-A

Chain DX

40S ribosomal protein S23-A

Chain JD

Probable ATP-dependent RNA helicase DHR1