J3_6ZQG_009

3D structure

PDB id

6ZQG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6ZQG|1|D3|U|227, 6ZQG|1|D3|U|238, 6ZQG|1|D3|C|239, 6ZQG|1|D3|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZQG|1|D3|A|213
6ZQG|1|D3|G|214
6ZQG|1|D3|A|215
6ZQG|1|D3|U|216
6ZQG|1|D3|A|217
6ZQG|1|D3|A|218
6ZQG|1|D3|A|219
6ZQG|1|D3|A|220
6ZQG|1|D3|A|221
6ZQG|1|D3|A|222
6ZQG|1|D3|U|223
6ZQG|1|D3|C|224
6ZQG|1|D3|A|225
6ZQG|1|D3|A|226
6ZQG|1|D3|U|227
6ZQG|1|D3|G|228
*
6ZQG|1|D3|C|237
6ZQG|1|D3|U|238
6ZQG|1|D3|C|239
6ZQG|1|D3|U|240
6ZQG|1|D3|U|241
6ZQG|1|D3|U|242
6ZQG|1|D3|G|243
*
6ZQG|1|D3|C|250
6ZQG|1|D3|A|251
6ZQG|1|D3|U|252

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DE

40S ribosomal protein S4-A

Chain DG

40S ribosomal protein S6-A

Chain DL

40S ribosomal protein S11-A