J3_6ZSA_011

3D structure

PDB id

6ZSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome bound to mRNA, A-site tRNA and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSA_011 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1644

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6ZSA|1|XA|C|1930
6ZSA|1|XA|A|1931
6ZSA|1|XA|G|1932
*
6ZSA|1|XA|C|1942
6ZSA|1|XA|A|1943
6ZSA|1|XA|C|1944
6ZSA|1|XA|A|1945
6ZSA|1|XA|C|1946
*
6ZSA|1|XA|G|1970
6ZSA|1|XA|A|1971
6ZSA|1|XA|A|1972
6ZSA|1|XA|G|1973

Current chains

Chain XA

16S rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain XD

39S ribosomal protein L2, mitochondrial