J3_6ZSE_002

3D structure

PDB id

6ZSE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P-tRNA and P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAUUAC*GAUUAACCU*AGC

Length

18 nucleotides

Bulged bases

6ZSE|1|AA|A|691, 6ZSE|1|AA|A|826

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZSE_002 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.5168

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZSE|1|AA|G|687
6ZSE|1|AA|A|688
6ZSE|1|AA|U|689
6ZSE|1|AA|U|690
6ZSE|1|AA|A|691
6ZSE|1|AA|C|692
*
6ZSE|1|AA|G|822
6ZSE|1|AA|A|823
6ZSE|1|AA|U|824
6ZSE|1|AA|U|825
6ZSE|1|AA|A|826
6ZSE|1|AA|A|827
6ZSE|1|AA|C|828
6ZSE|1|AA|C|829
6ZSE|1|AA|U|830
*
6ZSE|1|AA|A|856
6ZSE|1|AA|G|857
6ZSE|1|AA|C|858

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial