J3_6ZTJ_002

3D structure

PDB id

6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTJ_002 not in the Motif Atlas

Homologous match to J3_5J7L_002

Geometric discrepancy: 0.0958

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6ZTJ|1|AA|C|586
6ZTJ|1|AA|G|587
6ZTJ|1|AA|G|588
*
6ZTJ|1|AA|C|651
6ZTJ|1|AA|U|652
6ZTJ|1|AA|U|653
6ZTJ|1|AA|G|654
*
6ZTJ|1|AA|C|754
6ZTJ|1|AA|G|755

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AL

30S ribosomal protein S12

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17