3D structure

PDB id
6ZTJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GCCGUAG*CGC*GGAAC
Length
15 nucleotides
Bulged bases
6ZTJ|1|BB|U|14, 6ZTJ|1|BB|A|108
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZTJ_027 not in the Motif Atlas
Homologous match to J3_5J7L_049
Geometric discrepancy: 0.076
The information below is about J3_5J7L_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_89095.1
Basepair signature
cWW-F-F-F-tHS-F-cWW-F-cWW
Number of instances in this motif group
1

Unit IDs

6ZTJ|1|BB|G|10
6ZTJ|1|BB|C|11
6ZTJ|1|BB|C|12
6ZTJ|1|BB|G|13
6ZTJ|1|BB|U|14
6ZTJ|1|BB|A|15
6ZTJ|1|BB|G|16
*
6ZTJ|1|BB|C|68
6ZTJ|1|BB|G|69
6ZTJ|1|BB|C|70
*
6ZTJ|1|BB|G|106
6ZTJ|1|BB|G|107
6ZTJ|1|BB|A|108
6ZTJ|1|BB|A|109
6ZTJ|1|BB|C|110

Current chains

Chain BB
5S ribosomal RNA

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BP
50S ribosomal protein L18
Chain BW
50S ribosomal protein L25
Chain BX
50S ribosomal protein L27

Coloring options:


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