J3_6ZTM_037
3D structure
- PDB id
- 6ZTM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-RNAP expressome complex in collided state without NusG
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6ZTM|1|BA|A|2388, 6ZTM|1|BA|U|2390, 6ZTM|1|BA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ZTM_037 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0768
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ZTM|1|BA|G|2282
6ZTM|1|BA|C|2283
6ZTM|1|BA|A|2284
*
6ZTM|1|BA|U|2384
6ZTM|1|BA|C|2385
6ZTM|1|BA|A|2386
6ZTM|1|BA|U|2387
6ZTM|1|BA|A|2388
6ZTM|1|BA|G|2389
6ZTM|1|BA|U|2390
6ZTM|1|BA|G|2391
6ZTM|1|BA|A|2392
6ZTM|1|BA|U|2393
6ZTM|1|BA|C|2394
6ZTM|1|BA|C|2395
*
6ZTM|1|BA|G|2421
6ZTM|1|BA|C|2422
6ZTM|1|BA|U|2423
6ZTM|1|BA|C|2424
6ZTM|1|BA|A|2425
6ZTM|1|BA|A|2426
6ZTM|1|BA|C|2427
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L33
- Chain B5
- 50S ribosomal protein L35
- Chain BM
- 50S ribosomal protein L15
- Chain BX
- 50S ribosomal protein L27
Coloring options: