J3_6ZTN_007

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTN_007 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1314

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6ZTN|1|AA|C|990
6ZTN|1|AA|U|991
6ZTN|1|AA|U|992
6ZTN|1|AA|G|993
*
6ZTN|1|AA|C|1045
6ZTN|1|AA|A|1046
6ZTN|1|AA|G|1047
*
6ZTN|1|AA|C|1210
6ZTN|1|AA|U|1211
6ZTN|1|AA|U|1212
6ZTN|1|AA|A|1213
6ZTN|1|AA|C|1214
6ZTN|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14