J3_6ZTN_015

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6ZTN|1|BA|U|686, 6ZTN|1|BA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTN_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0927

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6ZTN|1|BA|U|683
6ZTN|1|BA|G|684
6ZTN|1|BA|A|685
6ZTN|1|BA|U|686
6ZTN|1|BA|C|687
6ZTN|1|BA|U|688
6ZTN|1|BA|A|689
*
6ZTN|1|BA|U|773
6ZTN|1|BA|G|774
6ZTN|1|BA|G|775
*
6ZTN|1|BA|C|791
6ZTN|1|BA|A|792
6ZTN|1|BA|A|793
6ZTN|1|BA|A|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2