J3_6ZTN_020

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTN_020 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1224

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6ZTN|1|BA|U|1344
6ZTN|1|BA|C|1345
6ZTN|1|BA|G|1346
6ZTN|1|BA|A|1347
6ZTN|1|BA|C|1348
6ZTN|1|BA|C|1349
*
6ZTN|1|BA|G|1382
6ZTN|1|BA|A|1383
6ZTN|1|BA|A|1384
6ZTN|1|BA|A|1385
*
6ZTN|1|BA|U|1402
6ZTN|1|BA|A|1403

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L23