J3_6ZTN_031

3D structure

PDB id

6ZTN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

6ZTN|1|AA|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZTN_031 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.1303

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ZTN|1|AA|U|1116
6ZTN|1|AA|A|1117
6ZTN|1|AA|U|1118
*
6ZTN|1|AA|A|1155
6ZTN|1|AA|G|1156
6ZTN|1|AA|A|1157
6ZTN|1|AA|C|1158
6ZTN|1|AA|U|1159
6ZTN|1|AA|G|1160
6ZTN|1|AA|C|1161
*
6ZTN|1|AA|G|1175
6ZTN|1|AA|A|1176
6ZTN|1|AA|G|1177
6ZTN|1|AA|G|1178
6ZTN|1|AA|A|1179
6ZTN|1|AA|A|1180
6ZTN|1|AA|G|1181
6ZTN|1|AA|G|1182
6ZTN|1|AA|U|1183
6ZTN|1|AA|G|1184

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14