3D structure

PDB id
6ZTN (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in NusG-coupled state (42 nt intervening mRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
6ZTN|1|BA|A|2388, 6ZTN|1|BA|U|2390, 6ZTN|1|BA|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZTN_035 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0914
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6ZTN|1|BA|G|2282
6ZTN|1|BA|C|2283
6ZTN|1|BA|A|2284
*
6ZTN|1|BA|U|2384
6ZTN|1|BA|C|2385
6ZTN|1|BA|A|2386
6ZTN|1|BA|U|2387
6ZTN|1|BA|A|2388
6ZTN|1|BA|G|2389
6ZTN|1|BA|U|2390
6ZTN|1|BA|G|2391
6ZTN|1|BA|A|2392
6ZTN|1|BA|U|2393
6ZTN|1|BA|C|2394
6ZTN|1|BA|C|2395
*
6ZTN|1|BA|G|2421
6ZTN|1|BA|C|2422
6ZTN|1|BA|U|2423
6ZTN|1|BA|C|2424
6ZTN|1|BA|A|2425
6ZTN|1|BA|A|2426
6ZTN|1|BA|C|2427

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AZ
Transfer RNA; tRNA
Chain B3
50S ribosomal protein L33
Chain B5
50S ribosomal protein L35
Chain BM
50S ribosomal protein L15
Chain BX
50S ribosomal protein L27

Coloring options:


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