3D structure

PDB id
6ZTP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-RNAP expressome complex in uncoupled state 6
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
6ZTP|1|BA|U|2334, 6ZTP|1|BA|A|2336
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ZTP_037 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1041
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

6ZTP|1|BA|C|2295
6ZTP|1|BA|U|2296
6ZTP|1|BA|A|2297
6ZTP|1|BA|A|2298
6ZTP|1|BA|U|2299
*
6ZTP|1|BA|A|2317
6ZTP|1|BA|G|2318
6ZTP|1|BA|G|2319
6ZTP|1|BA|U|2320
6ZTP|1|BA|U|2321
6ZTP|1|BA|A|2322
6ZTP|1|BA|G|2323
*
6ZTP|1|BA|C|2332
6ZTP|1|BA|A|2333
6ZTP|1|BA|U|2334
6ZTP|1|BA|A|2335
6ZTP|1|BA|A|2336
6ZTP|1|BA|G|2337

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AW
Transfer RNA; tRNA
Chain BB
5S ribosomal RNA; 5S rRNA
Chain BF
50S ribosomal protein L5
Chain BP
50S ribosomal protein L18
Chain BX
50S ribosomal protein L27

Coloring options:


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