J3_6ZU1_017

3D structure

PDB id

6ZU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-RNAP expressome complex in uncoupled state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZU1_017 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0482

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6ZU1|1|BA|C|698
6ZU1|1|BA|A|699
6ZU1|1|BA|G|700
*
6ZU1|1|BA|C|732
6ZU1|1|BA|G|733
6ZU1|1|BA|A|734
6ZU1|1|BA|A|735
6ZU1|1|BA|C|736
*
6ZU1|1|BA|G|760
6ZU1|1|BA|A|761
6ZU1|1|BA|U|762
6ZU1|1|BA|G|763

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2