J3_6ZVJ_001

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ZVJ_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1466

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6ZVJ|1|2|A|40
6ZVJ|1|2|G|41
*
6ZVJ|1|2|C|481
6ZVJ|1|2|G|482
6ZVJ|1|2|C|483
6ZVJ|1|2|A|484
6ZVJ|1|2|A|485
6ZVJ|1|2|A|486
6ZVJ|1|2|U|487
*
6ZVJ|1|2|A|512
6ZVJ|1|2|G|513
6ZVJ|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

ATP-binding cassette sub-family E member 1

Chain c

40S ribosomal protein S9

Chain j

40S ribosomal protein S23