J3_6ZVJ_002

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUC*GGACCAGAG*CAUUUG

Length

20 nucleotides

Bulged bases

6ZVJ|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVJ|1|2|C|937
6ZVJ|1|2|A|938
6ZVJ|1|2|U|939
6ZVJ|1|2|U|940
6ZVJ|1|2|C|941
*
6ZVJ|1|2|G|985
6ZVJ|1|2|G|986
6ZVJ|1|2|A|987
6ZVJ|1|2|C|988
6ZVJ|1|2|C|989
6ZVJ|1|2|A|990
6ZVJ|1|2|G|991
6ZVJ|1|2|A|992
6ZVJ|1|2|G|993
*
6ZVJ|1|2|C|1000
6ZVJ|1|2|A|1001
6ZVJ|1|2|U|1002
6ZVJ|1|2|U|1003
6ZVJ|1|2|U|1004
6ZVJ|1|2|G|1005

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S26

Chain i

40S ribosomal protein S14

Chain m

40S ribosomal protein S13

Chain p

40S ribosomal protein S3a