J3_6ZVJ_004

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAGG*CCCAGUAA*UGAUUAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVJ|1|2|C|1218
6ZVJ|1|2|C|1219
6ZVJ|1|2|A|1220
6ZVJ|1|2|G|1221
6ZVJ|1|2|G|1222
*
6ZVJ|1|2|C|1644
6ZVJ|1|2|C|1645
6ZVJ|1|2|C|1646
6ZVJ|1|2|A|1647
6ZVJ|1|2|G|1648
6ZVJ|1|2|U|1649
6ZVJ|1|2|A|1650
6ZVJ|1|2|A|1651
*
6ZVJ|1|2|U|1673
6ZVJ|1|2|G|1674
6ZVJ|1|2|A|1675
6ZVJ|1|2|U|1676
6ZVJ|1|2|U|1677
6ZVJ|1|2|A|1678
6ZVJ|1|2|A|1679
6ZVJ|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S28

Chain e

40S ribosomal protein S5

Chain g

40S ribosomal protein S16