J3_6ZVJ_005

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUGGA*UAC*GGAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVJ|1|2|A|1223
6ZVJ|1|2|G|1224
6ZVJ|1|2|U|1225
6ZVJ|1|2|G|1226
6ZVJ|1|2|G|1227
6ZVJ|1|2|A|1228
*
6ZVJ|1|2|U|1530
6ZVJ|1|2|A|1531
6ZVJ|1|2|C|1532
*
6ZVJ|1|2|G|1638
6ZVJ|1|2|G|1639
6ZVJ|1|2|A|1640
6ZVJ|1|2|A|1641
6ZVJ|1|2|U|1642
6ZVJ|1|2|U|1643

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain e

40S ribosomal protein S5

Chain g

40S ribosomal protein S16

Chain k

40S ribosomal protein S18

Chain x

40S ribosomal protein S19