J3_6ZVJ_007

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6ZVJ|1|2|G|1274, 6ZVJ|1|2|G|1507, 6ZVJ|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVJ|1|2|G|1270
6ZVJ|1|2|C|1271
6ZVJ|1|2|C|1272
6ZVJ|1|2|C|1273
6ZVJ|1|2|G|1274
6ZVJ|1|2|G|1275
6ZVJ|1|2|A|1276
6ZVJ|1|2|C|1277
*
6ZVJ|1|2|G|1320
6ZVJ|1|2|G|1321
6ZVJ|1|2|G|1322
6ZVJ|1|2|U|1323
6ZVJ|1|2|G|1324
*
6ZVJ|1|2|U|1504
6ZVJ|1|2|U|1505
6ZVJ|1|2|A|1506
6ZVJ|1|2|G|1507
6ZVJ|1|2|A|1508
6ZVJ|1|2|U|1509
6ZVJ|1|2|G|1510
6ZVJ|1|2|U|1511
6ZVJ|1|2|C|1512

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Eukaryotic translation initiation factor 3 subunit J

Chain U

Ubiquitin-40S ribosomal protein S27a

Chain l

40S ribosomal protein S29

Chain o

40S ribosomal protein S15

Chain u

40S ribosomal protein S10