J3_6ZVJ_012

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAAAAUUAGAG*CAG*CUGGAUACCGCAGC

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVJ|1|2|G|807
6ZVJ|1|2|A|808
6ZVJ|1|2|A|809
6ZVJ|1|2|A|810
6ZVJ|1|2|A|811
6ZVJ|1|2|A|812
6ZVJ|1|2|A|813
6ZVJ|1|2|U|814
6ZVJ|1|2|U|815
6ZVJ|1|2|A|816
6ZVJ|1|2|G|817
6ZVJ|1|2|A|818
6ZVJ|1|2|G|819
*
6ZVJ|1|2|C|829
6ZVJ|1|2|A|830
6ZVJ|1|2|G|831
*
6ZVJ|1|2|C|843
6ZVJ|1|2|U|844
6ZVJ|1|2|G|845
6ZVJ|1|2|G|846
6ZVJ|1|2|A|847
6ZVJ|1|2|U|848
6ZVJ|1|2|A|849
6ZVJ|1|2|C|850
6ZVJ|1|2|C|851
6ZVJ|1|2|G|852
6ZVJ|1|2|C|853
6ZVJ|1|2|A|854
6ZVJ|1|2|G|855
6ZVJ|1|2|C|856

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S9

Chain f

40S ribosomal protein S15a

Chain n

40S ribosomal protein S11

Chain q

40S ribosomal protein S4, X isoform

Chain z

40S ribosomal protein S24