J3_6ZVJ_014

3D structure

PDB id

6ZVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human ABCE1-bound 43S pre-initiation complex - State II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUAAUUUG*CGGGAAACCUCAC*GGCUG

Length

27 nucleotides

Bulged bases

6ZVJ|1|2|G|1256, 6ZVJ|1|2|A|1258, 6ZVJ|1|2|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVJ|1|2|C|1237
6ZVJ|1|2|U|1238
6ZVJ|1|2|U|1239
6ZVJ|1|2|A|1240
6ZVJ|1|2|A|1241
6ZVJ|1|2|U|1242
6ZVJ|1|2|U|1243
6ZVJ|1|2|U|1244
6ZVJ|1|2|G|1245
*
6ZVJ|1|2|C|1254
6ZVJ|1|2|G|1255
6ZVJ|1|2|G|1256
6ZVJ|1|2|G|1257
6ZVJ|1|2|A|1258
6ZVJ|1|2|A|1259
6ZVJ|1|2|A|1260
6ZVJ|1|2|C|1261
6ZVJ|1|2|C|1262
6ZVJ|1|2|U|1263
6ZVJ|1|2|C|1264
6ZVJ|1|2|A|1265
6ZVJ|1|2|C|1266
*
6ZVJ|1|2|G|1516
6ZVJ|1|2|G|1517
6ZVJ|1|2|C|1518
6ZVJ|1|2|U|1519
6ZVJ|1|2|G|1520

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain g

40S ribosomal protein S16

Chain h

40S ribosomal protein S20

Chain k

40S ribosomal protein S18

Chain l

40S ribosomal protein S29

Chain o

40S ribosomal protein S15