J3_6ZVK_005
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CCG*UUCCG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 6ZVK|1|K3|C|1138, 6ZVK|1|K3|A|1150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|C|1094
6ZVK|1|K3|C|1095
6ZVK|1|K3|G|1096
*
6ZVK|1|K3|U|1136
6ZVK|1|K3|U|1137
6ZVK|1|K3|C|1138
6ZVK|1|K3|C|1139
6ZVK|1|K3|G|1140
*
6ZVK|1|K3|C|1147
6ZVK|1|K3|A|1148
6ZVK|1|K3|A|1149
6ZVK|1|K3|A|1150
6ZVK|1|K3|G|1151
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain D3
- 40S RIBOSOMAL PROTEIN ES21
- Chain F3
- ribosomal protein uS15
- Chain J5
- Ribosomal protein S15a
- Chain L3
- 40S ribosomal protein S27
- Chain O3
- 40S RIBOSOMAL PROTEIN ES26
- Chain U3
- 40S_SA_C domain-containing protein
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