J3_6ZVK_007
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCACC*GGCUG
- Length
- 28 nucleotides
- Bulged bases
- 6ZVK|1|K3|G|1256, 6ZVK|1|K3|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|C|1237
6ZVK|1|K3|U|1238
6ZVK|1|K3|U|1239
6ZVK|1|K3|A|1240
6ZVK|1|K3|A|1241
6ZVK|1|K3|U|1242
6ZVK|1|K3|U|1243
6ZVK|1|K3|U|1244
6ZVK|1|K3|G|1245
*
6ZVK|1|K3|C|1254
6ZVK|1|K3|G|1255
6ZVK|1|K3|G|1256
6ZVK|1|K3|G|1257
6ZVK|1|K3|A|1258
6ZVK|1|K3|A|1259
6ZVK|1|K3|A|1260
6ZVK|1|K3|C|1261
6ZVK|1|K3|C|1262
6ZVK|1|K3|U|1263
6ZVK|1|K3|C|1264
6ZVK|1|K3|A|1265
6ZVK|1|K3|C|1266
6ZVK|1|K3|C|1267
*
6ZVK|1|K3|G|1516
6ZVK|1|K3|G|1517
6ZVK|1|K3|C|1518
6ZVK|1|K3|U|1519
6ZVK|1|K3|G|1520
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- ribosomal protein uS19
- Chain B3
- 40S RIBOSOMAL PROTEIN US9
- Chain G5
- ribosomal protein uS13
- Chain H3
- ribosomal protein uS14
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain Q3
- 40S RIBOSOMAL PROTEIN ES31
Coloring options: