J3_6ZVK_011
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CUGGCAUGC*GAGGGAC*GAUUG
- Length
- 21 nucleotides
- Bulged bases
- 6ZVK|1|K3|U|1397, 6ZVK|1|K3|A|1476, 6ZVK|1|K3|U|1477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|C|1391
6ZVK|1|K3|U|1392
6ZVK|1|K3|G|1393
6ZVK|1|K3|G|1394
6ZVK|1|K3|C|1395
6ZVK|1|K3|A|1396
6ZVK|1|K3|U|1397
6ZVK|1|K3|G|1398
6ZVK|1|K3|C|1399
*
6ZVK|1|K3|G|1447
6ZVK|1|K3|A|1448
6ZVK|1|K3|G|1449
6ZVK|1|K3|G|1450
6ZVK|1|K3|G|1451
6ZVK|1|K3|A|1452
6ZVK|1|K3|C|1453
*
6ZVK|1|K3|G|1475
6ZVK|1|K3|A|1476
6ZVK|1|K3|U|1477
6ZVK|1|K3|U|1478
6ZVK|1|K3|G|1479
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain B3
- 40S RIBOSOMAL PROTEIN US9
- Chain C3
- 40S RIBOSOMAL PROTEIN ES17
- Chain H3
- ribosomal protein uS14
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain N3
- Ribosomal protein S5
- Chain Y3
- Ribosomal protein S3
- Chain a3
- ribosomal protein RACK1
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