J3_6ZVK_014
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CAGCG*CGUACG*CCGG
- Length
- 15 nucleotides
- Bulged bases
- 6ZVK|1|e2|C|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|C|112
6ZVK|1|e2|A|113
6ZVK|1|e2|G|114
6ZVK|1|e2|C|115
6ZVK|1|e2|G|116
*
6ZVK|1|e2|C|155
6ZVK|1|e2|G|156
6ZVK|1|e2|U|157
6ZVK|1|e2|A|158
6ZVK|1|e2|C|159
6ZVK|1|e2|G|160
*
6ZVK|1|e2|C|275
6ZVK|1|e2|C|276
6ZVK|1|e2|G|277
6ZVK|1|e2|G|278
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 12
- Ribosomal protein L15
- Chain A2
- uL29
- Chain B2
- 60S ribosomal protein L36
- Chain V2
- 60S RIBOSOMAL PROTEIN EL8
- Chain a7
- 60S ribosomal protein L13
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