J3_6ZVK_016

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCGCAGUC*GUGC*GACGUC

Length

18 nucleotides

Bulged bases

6ZVK|1|e2|U|454, 6ZVK|1|e2|G|703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|448
6ZVK|1|e2|C|449
6ZVK|1|e2|G|450
6ZVK|1|e2|C|451
6ZVK|1|e2|A|452
6ZVK|1|e2|G|453
6ZVK|1|e2|U|454
6ZVK|1|e2|C|455
*
6ZVK|1|e2|G|701
6ZVK|1|e2|U|702
6ZVK|1|e2|G|703
6ZVK|1|e2|C|704
*
6ZVK|1|e2|G|1293
6ZVK|1|e2|A|1294
6ZVK|1|e2|C|1295
6ZVK|1|e2|G|1296
6ZVK|1|e2|U|1297
6ZVK|1|e2|C|1298

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain J2

60S RIBOSOMAL PROTEIN EL28

Chain T2

60S ribosomal protein L6

Chain v2

eL32

Chain x2

eL33