J3_6ZVK_017
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- ACC*GAGGGAGCGAGACCCGUCGCCG*CACGGGGU
- Length
- 33 nucleotides
- Bulged bases
- 6ZVK|1|e2|C|962, 6ZVK|1|e2|G|963, 6ZVK|1|e2|A|966, 6ZVK|1|e2|C|967, 6ZVK|1|e2|C|968, 6ZVK|1|e2|G|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|A|711
6ZVK|1|e2|C|712
6ZVK|1|e2|C|713
*
6ZVK|1|e2|G|955
6ZVK|1|e2|A|956
6ZVK|1|e2|G|957
6ZVK|1|e2|G|958
6ZVK|1|e2|G|959
6ZVK|1|e2|A|960
6ZVK|1|e2|G|961
6ZVK|1|e2|C|962
6ZVK|1|e2|G|963
6ZVK|1|e2|A|964
6ZVK|1|e2|G|965
6ZVK|1|e2|A|966
6ZVK|1|e2|C|967
6ZVK|1|e2|C|968
6ZVK|1|e2|C|969
6ZVK|1|e2|G|970
6ZVK|1|e2|U|971
6ZVK|1|e2|C|972
6ZVK|1|e2|G|973
6ZVK|1|e2|C|974
6ZVK|1|e2|C|975
6ZVK|1|e2|G|976
*
6ZVK|1|e2|C|1278
6ZVK|1|e2|A|1279
6ZVK|1|e2|C|1280
6ZVK|1|e2|G|1281
6ZVK|1|e2|G|1282
6ZVK|1|e2|G|1283
6ZVK|1|e2|G|1284
6ZVK|1|e2|U|1285
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain J2
- 60S RIBOSOMAL PROTEIN EL28
- Chain R2
- Ribosomal_L6e_N domain-containing protein
- Chain T2
- 60S ribosomal protein L6
- Chain U2
- uL30
- Chain t2
- uL4
- Chain v2
- eL32
- Chain x2
- eL33
Coloring options: