J3_6ZVK_019

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUCUCCCACC*GGCGG*CCGGG

Length

20 nucleotides

Bulged bases

6ZVK|1|e2|G|1166

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|1099
6ZVK|1|e2|U|1100
6ZVK|1|e2|C|1101
6ZVK|1|e2|U|1102
6ZVK|1|e2|C|1103
6ZVK|1|e2|C|1104
6ZVK|1|e2|C|1105
6ZVK|1|e2|A|1106
6ZVK|1|e2|C|1107
6ZVK|1|e2|C|1108
*
6ZVK|1|e2|G|1165
6ZVK|1|e2|G|1166
6ZVK|1|e2|C|1167
6ZVK|1|e2|G|1168
6ZVK|1|e2|G|1169
*
6ZVK|1|e2|C|1192
6ZVK|1|e2|C|1193
6ZVK|1|e2|G|1194
6ZVK|1|e2|G|1195
6ZVK|1|e2|G|1196

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain G2

60S ribosomal protein L5