J3_6ZVK_023

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAC*GCUAAGG*CAC

Length

14 nucleotides

Bulged bases

6ZVK|1|e2|U|1996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|1967
6ZVK|1|e2|G|1968
6ZVK|1|e2|A|1969
6ZVK|1|e2|C|1970
*
6ZVK|1|e2|G|1994
6ZVK|1|e2|C|1995
6ZVK|1|e2|U|1996
6ZVK|1|e2|A|1997
6ZVK|1|e2|A|1998
6ZVK|1|e2|G|1999
6ZVK|1|e2|G|2000
*
6ZVK|1|e2|C|2015
6ZVK|1|e2|A|2016
6ZVK|1|e2|C|2017

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain K2

60S acidic ribosomal protein P0

Chain M2

Uncharacterized protein