J3_6ZVK_031

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CAU*GCUUCUG*CAAGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|C|4970
6ZVK|1|e2|A|4971
6ZVK|1|e2|U|4972
*
6ZVK|1|e2|G|4986
6ZVK|1|e2|C|4987
6ZVK|1|e2|U|4988
6ZVK|1|e2|U|4989
6ZVK|1|e2|C|4990
6ZVK|1|e2|U|4991
6ZVK|1|e2|G|4992
*
6ZVK|1|e2|C|5059
6ZVK|1|e2|A|5060
6ZVK|1|e2|A|5061
6ZVK|1|e2|G|5062
6ZVK|1|e2|G|5063

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 52

uL3

Chain H2

uL22

Chain u2

eL31