J3_6ZVK_034
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- CAGAUCAAAACCAACCC*GGCUUUG*CUAG
- Length
- 28 nucleotides
- Bulged bases
- 6ZVK|1|K3|C|228, 6ZVK|1|K3|A|229
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|C|223
6ZVK|1|K3|A|224
6ZVK|1|K3|G|225
6ZVK|1|K3|A|226
6ZVK|1|K3|U|227
6ZVK|1|K3|C|228
6ZVK|1|K3|A|229
6ZVK|1|K3|A|230
6ZVK|1|K3|A|231
6ZVK|1|K3|A|232
6ZVK|1|K3|C|233
6ZVK|1|K3|C|234
6ZVK|1|K3|A|235
6ZVK|1|K3|A|236
6ZVK|1|K3|C|237
6ZVK|1|K3|C|238
6ZVK|1|K3|C|239
*
6ZVK|1|K3|G|282
6ZVK|1|K3|G|283
6ZVK|1|K3|C|284
6ZVK|1|K3|U|285
6ZVK|1|K3|U|286
6ZVK|1|K3|U|287
6ZVK|1|K3|G|288
*
6ZVK|1|K3|C|295
6ZVK|1|K3|U|296
6ZVK|1|K3|A|297
6ZVK|1|K3|G|298
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain G3
- Ribosomal protein S11
- Chain b3
- 40S ribosomal protein S6
- Chain c3
- 40S ribosomal protein S8
- Chain j3
- 40S ribosomal protein S4
Coloring options: