J3_6ZVK_035
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UUGGA*UUAAGA*UAA
- Length
- 14 nucleotides
- Bulged bases
- 6ZVK|1|K3|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|U|681
6ZVK|1|K3|U|682
6ZVK|1|K3|G|683
6ZVK|1|K3|G|684
6ZVK|1|K3|A|685
*
6ZVK|1|K3|U|917
6ZVK|1|K3|U|918
6ZVK|1|K3|A|919
6ZVK|1|K3|A|920
6ZVK|1|K3|G|921
6ZVK|1|K3|A|922
*
6ZVK|1|K3|U|1022
6ZVK|1|K3|A|1023
6ZVK|1|K3|A|1024
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain F3
- ribosomal protein uS15
- Chain G3
- Ribosomal protein S11
- Chain J5
- Ribosomal protein S15a
- Chain L3
- 40S ribosomal protein S27
- Chain P3
- 40S RIBOSOMAL PROTEIN ES7
- Chain T3
- Ribosomal protein S23
Coloring options: