J3_6ZVK_038

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CACCACCAG*CCAGUAA*UGAUUAAGUCCCUG

Length

30 nucleotides

Bulged bases

6ZVK|1|K3|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|C|1213
6ZVK|1|K3|A|1214
6ZVK|1|K3|C|1215
6ZVK|1|K3|C|1216
6ZVK|1|K3|A|1217
6ZVK|1|K3|C|1218
6ZVK|1|K3|C|1219
6ZVK|1|K3|A|1220
6ZVK|1|K3|G|1221
*
6ZVK|1|K3|C|1645
6ZVK|1|K3|C|1646
6ZVK|1|K3|A|1647
6ZVK|1|K3|G|1648
6ZVK|1|K3|U|1649
6ZVK|1|K3|A|1650
6ZVK|1|K3|A|1651
*
6ZVK|1|K3|U|1673
6ZVK|1|K3|G|1674
6ZVK|1|K3|A|1675
6ZVK|1|K3|U|1676
6ZVK|1|K3|U|1677
6ZVK|1|K3|A|1678
6ZVK|1|K3|A|1679
6ZVK|1|K3|G|1680
6ZVK|1|K3|U|1681
6ZVK|1|K3|C|1682
6ZVK|1|K3|C|1683
6ZVK|1|K3|C|1684
6ZVK|1|K3|U|1685
6ZVK|1|K3|G|1686

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain B3

40S RIBOSOMAL PROTEIN US9

Chain E1

INTERNAL RIBOSOME ENTRY SITE

Chain N3

Ribosomal protein S5

Chain f3

ribosomal protein eS28