J3_6ZVK_039

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GCCCGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6ZVK|1|K3|G|1274, 6ZVK|1|K3|G|1507, 6ZVK|1|K3|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|K3|G|1270
6ZVK|1|K3|C|1271
6ZVK|1|K3|C|1272
6ZVK|1|K3|C|1273
6ZVK|1|K3|G|1274
6ZVK|1|K3|G|1275
6ZVK|1|K3|A|1276
6ZVK|1|K3|C|1277
*
6ZVK|1|K3|G|1320
6ZVK|1|K3|G|1321
6ZVK|1|K3|G|1322
6ZVK|1|K3|U|1323
6ZVK|1|K3|G|1324
*
6ZVK|1|K3|U|1504
6ZVK|1|K3|U|1505
6ZVK|1|K3|A|1506
6ZVK|1|K3|G|1507
6ZVK|1|K3|A|1508
6ZVK|1|K3|U|1509
6ZVK|1|K3|G|1510
6ZVK|1|K3|U|1511
6ZVK|1|K3|C|1512

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain E3

S10_plectin domain-containing protein

Chain H3

ribosomal protein uS14

Chain Q3

40S RIBOSOMAL PROTEIN ES31