J3_6ZVK_040
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- UGG*UUGUC*GAUAA
- Length
- 13 nucleotides
- Bulged bases
- 6ZVK|1|K3|A|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|K3|U|1350
6ZVK|1|K3|G|1351
6ZVK|1|K3|G|1352
*
6ZVK|1|K3|U|1359
6ZVK|1|K3|U|1360
6ZVK|1|K3|G|1361
6ZVK|1|K3|U|1362
6ZVK|1|K3|C|1363
*
6ZVK|1|K3|G|1375
6ZVK|1|K3|A|1376
6ZVK|1|K3|U|1377
6ZVK|1|K3|A|1378
6ZVK|1|K3|A|1379
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain C3
- 40S RIBOSOMAL PROTEIN ES17
- Chain D3
- 40S RIBOSOMAL PROTEIN ES21
- Chain U3
- 40S_SA_C domain-containing protein
- Chain W3
- S5 DRBM domain-containing protein
Coloring options: