J3_6ZVK_045

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UUU*AGAAG*CGUGGA

Length

14 nucleotides

Bulged bases

6ZVK|1|e2|A|1805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|U|1725
6ZVK|1|e2|U|1726
6ZVK|1|e2|U|1727
*
6ZVK|1|e2|A|1802
6ZVK|1|e2|G|1803
6ZVK|1|e2|A|1804
6ZVK|1|e2|A|1805
6ZVK|1|e2|G|1806
*
6ZVK|1|e2|C|1832
6ZVK|1|e2|G|1833
6ZVK|1|e2|U|1834
6ZVK|1|e2|G|1835
6ZVK|1|e2|G|1836
6ZVK|1|e2|A|1837

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 72

eL21

Chain U2

uL30

Chain r2

60S ribosomal protein L29