J3_6ZVK_046

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UAUAGACAGCAGGAC*GCUAAGG*CACCUGCCGAA

Length

33 nucleotides

Bulged bases

6ZVK|1|e2|U|1958, 6ZVK|1|e2|A|1959, 6ZVK|1|e2|A|1969, 6ZVK|1|e2|U|1996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|U|1956
6ZVK|1|e2|A|1957
6ZVK|1|e2|U|1958
6ZVK|1|e2|A|1959
6ZVK|1|e2|G|1960
6ZVK|1|e2|A|1961
6ZVK|1|e2|C|1962
6ZVK|1|e2|A|1963
6ZVK|1|e2|G|1964
6ZVK|1|e2|C|1965
6ZVK|1|e2|A|1966
6ZVK|1|e2|G|1967
6ZVK|1|e2|G|1968
6ZVK|1|e2|A|1969
6ZVK|1|e2|C|1970
*
6ZVK|1|e2|G|1994
6ZVK|1|e2|C|1995
6ZVK|1|e2|U|1996
6ZVK|1|e2|A|1997
6ZVK|1|e2|A|1998
6ZVK|1|e2|G|1999
6ZVK|1|e2|G|2000
*
6ZVK|1|e2|C|2015
6ZVK|1|e2|A|2016
6ZVK|1|e2|C|2017
6ZVK|1|e2|C|2018
6ZVK|1|e2|U|2019
6ZVK|1|e2|G|2020
6ZVK|1|e2|C|2021
6ZVK|1|e2|C|2022
6ZVK|1|e2|G|2023
6ZVK|1|e2|A|2024
6ZVK|1|e2|A|2025

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain E2

60S RIBOSOMAL PROTEIN EL40

Chain K2

60S acidic ribosomal protein P0

Chain M2

Uncharacterized protein