J3_6ZVK_048

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

GGAGAUGG*CAGU*AGGGUGUAAAUCUC

Length

26 nucleotides

Bulged bases

6ZVK|1|e2|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|G|2549
6ZVK|1|e2|G|2550
6ZVK|1|e2|A|2551
6ZVK|1|e2|G|2552
6ZVK|1|e2|A|2553
6ZVK|1|e2|U|2554
6ZVK|1|e2|G|2555
6ZVK|1|e2|G|2556
*
6ZVK|1|e2|C|2572
6ZVK|1|e2|A|2573
6ZVK|1|e2|G|2574
6ZVK|1|e2|U|2575
*
6ZVK|1|e2|A|2757
6ZVK|1|e2|G|2758
6ZVK|1|e2|G|2759
6ZVK|1|e2|G|2760
6ZVK|1|e2|U|2761
6ZVK|1|e2|G|2762
6ZVK|1|e2|U|2763
6ZVK|1|e2|A|2764
6ZVK|1|e2|A|2765
6ZVK|1|e2|A|2766
6ZVK|1|e2|U|2767
6ZVK|1|e2|C|2768
6ZVK|1|e2|U|2769
6ZVK|1|e2|C|2770

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 22

60S ribosomal protein L27

Chain y2

eL34