J3_6ZVK_050
3D structure
- PDB id
- 6ZVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.49 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 6ZVK|1|e2|G|4115, 6ZVK|1|e2|C|4116, 6ZVK|1|e2|U|4117, 6ZVK|1|e2|U|4118, 6ZVK|1|e2|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZVK|1|e2|G|4091
6ZVK|1|e2|G|4092
6ZVK|1|e2|G|4093
6ZVK|1|e2|G|4094
6ZVK|1|e2|G|4095
6ZVK|1|e2|C|4096
6ZVK|1|e2|G|4097
*
6ZVK|1|e2|C|4112
6ZVK|1|e2|U|4113
6ZVK|1|e2|C|4114
6ZVK|1|e2|G|4115
6ZVK|1|e2|C|4116
6ZVK|1|e2|U|4117
6ZVK|1|e2|U|4118
6ZVK|1|e2|C|4119
6ZVK|1|e2|U|4120
6ZVK|1|e2|G|4121
6ZVK|1|e2|G|4122
6ZVK|1|e2|C|4123
6ZVK|1|e2|G|4124
6ZVK|1|e2|C|4125
6ZVK|1|e2|C|4126
6ZVK|1|e2|A|4127
6ZVK|1|e2|A|4128
6ZVK|1|e2|G|4129
*
6ZVK|1|e2|C|4155
6ZVK|1|e2|G|4156
6ZVK|1|e2|A|4157
6ZVK|1|e2|C|4158
Current chains
- Chain e2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain 13
- Ribosomal protein L30
- Chain 22
- 60S ribosomal protein L27
- Chain 92
- 60S RIBOSOMAL PROTEIN UL2
- Chain I2
- ribosomal protein eL43
- Chain V2
- 60S RIBOSOMAL PROTEIN EL8
- Chain m2
- 60S RIBOSOMAL PROTEIN UL23
- Chain y2
- eL34
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