J3_6ZVK_052

3D structure

PDB id

6ZVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

UCGGUUG*CCUUCG*CGCACCGGCCGUUCGUGG

Length

31 nucleotides

Bulged bases

6ZVK|1|e2|C|4883, 6ZVK|1|e2|C|4937, 6ZVK|1|e2|A|4938, 6ZVK|1|e2|C|4939, 6ZVK|1|e2|C|4944, 6ZVK|1|e2|G|4945, 6ZVK|1|e2|G|4951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZVK|1|e2|U|4748
6ZVK|1|e2|C|4749
6ZVK|1|e2|G|4750
6ZVK|1|e2|G|4751
6ZVK|1|e2|U|4752
6ZVK|1|e2|U|4753
6ZVK|1|e2|G|4754
*
6ZVK|1|e2|C|4879
6ZVK|1|e2|C|4880
6ZVK|1|e2|U|4881
6ZVK|1|e2|U|4882
6ZVK|1|e2|C|4883
6ZVK|1|e2|G|4884
*
6ZVK|1|e2|C|4935
6ZVK|1|e2|G|4936
6ZVK|1|e2|C|4937
6ZVK|1|e2|A|4938
6ZVK|1|e2|C|4939
6ZVK|1|e2|C|4940
6ZVK|1|e2|G|4941
6ZVK|1|e2|G|4942
6ZVK|1|e2|C|4943
6ZVK|1|e2|C|4944
6ZVK|1|e2|G|4945
6ZVK|1|e2|U|4946
6ZVK|1|e2|U|4947
6ZVK|1|e2|C|4948
6ZVK|1|e2|G|4949
6ZVK|1|e2|U|4950
6ZVK|1|e2|G|4951
6ZVK|1|e2|G|4952

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain T2

60S ribosomal protein L6

Chain Z2

Ribosomal protein L14

Chain w2

60S RIBOSOMAL PROTEIN UL13

Chain x2

eL33