J3_6ZXF_003

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUUC*GGACCAGAG*CAUUUG

Length

20 nucleotides

Bulged bases

6ZXF|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXF|1|2|C|937
6ZXF|1|2|A|938
6ZXF|1|2|U|939
6ZXF|1|2|U|940
6ZXF|1|2|C|941
*
6ZXF|1|2|G|985
6ZXF|1|2|G|986
6ZXF|1|2|A|987
6ZXF|1|2|C|988
6ZXF|1|2|C|989
6ZXF|1|2|A|990
6ZXF|1|2|G|991
6ZXF|1|2|A|992
6ZXF|1|2|G|993
*
6ZXF|1|2|C|1000
6ZXF|1|2|A|1001
6ZXF|1|2|U|1002
6ZXF|1|2|U|1003
6ZXF|1|2|U|1004
6ZXF|1|2|G|1005

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain N

40S ribosomal protein S13

Chain O

40S ribosomal protein S14

Chain k

Leucine-rich repeat-containing protein 47

Chain y

RNA-binding protein NOB1