J3_6ZXF_006

3D structure

PDB id

6ZXF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUGGA*UAC*GGAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXF|1|2|A|1223
6ZXF|1|2|G|1224
6ZXF|1|2|U|1225
6ZXF|1|2|G|1226
6ZXF|1|2|G|1227
6ZXF|1|2|A|1228
*
6ZXF|1|2|U|1530
6ZXF|1|2|A|1531
6ZXF|1|2|C|1532
*
6ZXF|1|2|G|1638
6ZXF|1|2|G|1639
6ZXF|1|2|A|1640
6ZXF|1|2|A|1641
6ZXF|1|2|U|1642
6ZXF|1|2|U|1643

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain S

40S ribosomal protein S18

Chain T

40S ribosomal protein S19

Chain z

Serine/threonine-protein kinase RIO1