J3_6ZXG_008

3D structure

PDB id

6ZXG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - State H1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GC(OMC)CGGAC*GGGUG*UUAGAUGUC

Length

22 nucleotides

Bulged bases

6ZXG|1|2|G|1274, 6ZXG|1|2|G|1507

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZXG|1|2|G|1270
6ZXG|1|2|C|1271
6ZXG|1|2|OMC|1272
6ZXG|1|2|C|1273
6ZXG|1|2|G|1274
6ZXG|1|2|G|1275
6ZXG|1|2|A|1276
6ZXG|1|2|C|1277
*
6ZXG|1|2|G|1320
6ZXG|1|2|G|1321
6ZXG|1|2|G|1322
6ZXG|1|2|U|1323
6ZXG|1|2|G|1324
*
6ZXG|1|2|U|1504
6ZXG|1|2|U|1505
6ZXG|1|2|A|1506
6ZXG|1|2|G|1507
6ZXG|1|2|A|1508
6ZXG|1|2|U|1509
6ZXG|1|2|G|1510
6ZXG|1|2|U|1511
6ZXG|1|2|C|1512

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain P

40S ribosomal protein S15

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain j

Probable RNA-binding protein EIF1AD