J3_7A01_002
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGGA*UUAAGA*UA
- Length
- 12 nucleotides
- Bulged bases
- 7A01|1|K3|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|U|682
7A01|1|K3|G|683
7A01|1|K3|G|684
7A01|1|K3|A|685
*
7A01|1|K3|U|917
7A01|1|K3|U|918
7A01|1|K3|A|919
7A01|1|K3|A|920
7A01|1|K3|G|921
7A01|1|K3|A|922
*
7A01|1|K3|U|1022
7A01|1|K3|A|1023
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain F3
- ribosomal protein uS15
- Chain G3
- Ribosomal protein S11
- Chain J5
- Ribosomal protein S15a
- Chain L3
- 40S ribosomal protein S27
- Chain P3
- 40S RIBOSOMAL PROTEIN ES7
- Chain T3
- Ribosomal protein S23
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