J3_7A01_003
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7A01|1|K3|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7A01_003 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.2219
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7A01|1|K3|A|938
7A01|1|K3|U|939
7A01|1|K3|U|940
7A01|1|K3|C|941
*
7A01|1|K3|G|985
7A01|1|K3|G|986
7A01|1|K3|A|987
7A01|1|K3|C|988
7A01|1|K3|C|989
7A01|1|K3|A|990
7A01|1|K3|G|991
7A01|1|K3|A|992
7A01|1|K3|G|993
*
7A01|1|K3|C|1000
7A01|1|K3|A|1001
7A01|1|K3|U|1002
7A01|1|K3|U|1003
7A01|1|K3|U|1004
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain F3
- ribosomal protein uS15
- Chain I2
- ribosomal protein eL43
- Chain O3
- 40S RIBOSOMAL PROTEIN ES26
- Chain V3
- 40S ribosomal protein S3a
- Chain a5
- Uncharacterized protein
Coloring options: