J3_7A01_004
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCG*UUCCGG*CAAAG
- Length
- 14 nucleotides
- Bulged bases
- 7A01|1|K3|C|1138
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|C|1094
7A01|1|K3|C|1095
7A01|1|K3|G|1096
*
7A01|1|K3|U|1136
7A01|1|K3|U|1137
7A01|1|K3|C|1138
7A01|1|K3|C|1139
7A01|1|K3|G|1140
7A01|1|K3|G|1141
*
7A01|1|K3|C|1147
7A01|1|K3|A|1148
7A01|1|K3|A|1149
7A01|1|K3|A|1150
7A01|1|K3|G|1151
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain D3
- 40S RIBOSOMAL PROTEIN ES21
- Chain J5
- Ribosomal protein S15a
- Chain L3
- 40S ribosomal protein S27
- Chain O3
- 40S RIBOSOMAL PROTEIN ES26
- Chain U3
- 40S_SA_C domain-containing protein
- Chain W3
- S5 DRBM domain-containing protein
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