J3_7A01_007
3D structure
- PDB id
- 7A01 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 7A01|1|K3|A|1240, 7A01|1|K3|G|1256, 7A01|1|K3|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7A01|1|K3|C|1237
7A01|1|K3|U|1238
7A01|1|K3|U|1239
7A01|1|K3|A|1240
7A01|1|K3|A|1241
7A01|1|K3|U|1242
7A01|1|K3|U|1243
7A01|1|K3|U|1244
7A01|1|K3|G|1245
*
7A01|1|K3|C|1254
7A01|1|K3|G|1255
7A01|1|K3|G|1256
7A01|1|K3|G|1257
7A01|1|K3|A|1258
7A01|1|K3|A|1259
7A01|1|K3|A|1260
7A01|1|K3|C|1261
7A01|1|K3|C|1262
7A01|1|K3|U|1263
7A01|1|K3|C|1264
7A01|1|K3|A|1265
7A01|1|K3|C|1266
*
7A01|1|K3|G|1516
7A01|1|K3|G|1517
7A01|1|K3|C|1518
7A01|1|K3|U|1519
7A01|1|K3|G|1520
Current chains
- Chain K3
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- ribosomal protein uS19
- Chain B3
- Uncharacterized protein
- Chain E3
- S10_plectin domain-containing protein
- Chain G5
- ribosomal protein uS13
- Chain H3
- ribosomal protein uS14
- Chain I3
- Ribosomal_S10 domain-containing protein
- Chain Q3
- 40S ribosomal protein S27a
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