J3_7A01_012

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CACUGA*UCGUGAUGG*CGAG

Length

19 nucleotides

Bulged bases

7A01|1|K3|U|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|K3|C|1532
7A01|1|K3|A|1533
7A01|1|K3|C|1534
7A01|1|K3|U|1535
7A01|1|K3|G|1536
7A01|1|K3|A|1537
*
7A01|1|K3|U|1596
7A01|1|K3|C|1597
7A01|1|K3|G|1598
7A01|1|K3|U|1599
7A01|1|K3|G|1600
7A01|1|K3|A|1601
7A01|1|K3|U|1602
7A01|1|K3|G|1603
7A01|1|K3|G|1604
*
7A01|1|K3|C|1635
7A01|1|K3|G|1636
7A01|1|K3|A|1637
7A01|1|K3|G|1638

Current chains

Chain K3

18S RIBOSOMAL RNA

Nearby chains

Chain G5

ribosomal protein uS13

Chain H5

Uncharacterized protein

Chain M3

ribosomal protein eS25

Chain N3

Ribosomal protein S5