J3_7A01_014

3D structure

PDB id

7A01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

7A01|1|e2|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7A01|1|e2|C|112
7A01|1|e2|A|113
7A01|1|e2|G|114
7A01|1|e2|C|115
7A01|1|e2|G|116
*
7A01|1|e2|C|155
7A01|1|e2|G|156
7A01|1|e2|U|157
7A01|1|e2|A|158
7A01|1|e2|C|159
7A01|1|e2|G|160
*
7A01|1|e2|C|275
7A01|1|e2|C|276
7A01|1|e2|G|277
7A01|1|e2|G|278

Current chains

Chain e2

28S RIBOSOMAL RNA

Nearby chains

Chain 12

Ribosomal protein L15

Chain A2

uL29

Chain B2

60S ribosomal protein L36

Chain V2

60S RIBOSOMAL PROTEIN EL8

Chain a7

60S ribosomal protein L13